Index

A

app (in module biocontext_kb.app)

B

biocontext_kb module biocontext_kb.app module biocontext_kb.core module biocontext_kb.core.alphafold module biocontext_kb.core.antibodyregistry module biocontext_kb.core.biorxiv module biocontext_kb.core.clinicaltrials module biocontext_kb.core.ensembl module biocontext_kb.core.europepmc module biocontext_kb.core.grants module biocontext_kb.core.interpro module biocontext_kb.core.kegg module biocontext_kb.core.ols module

biocontext_kb.core.openfda module biocontext_kb.core.opentargets module biocontext_kb.core.panglaodb module biocontext_kb.core.pride module biocontext_kb.core.proteinatlas module biocontext_kb.core.reactome module biocontext_kb.core.scholarly module biocontext_kb.core.stringdb module biocontext_kb.core.uniprot module biocontext_kb.logging module biocontext_kb.main module biocontext_kb.openapi module biocontext_kb.utils module

C

check_valid_mcp() (in module biocontext_kb.openapi) core_mcp (in module biocontext_kb.core), [1], [2] (in module biocontext_kb.core.reactome)

count_drugs_by_field() (in module biocontext_kb.core.openfda)

E

execute_graphql_query() (in module biocontext_kb.utils)

F

fetch_graphql_schema() (in module biocontext_kb.utils)

G

get_alphafold_info_by_protein_symbol() (in module biocontext_kb.core.alphafold) get_alphafold_info_by_uniprot_id() (in module biocontext_kb.core.alphafold) get_antibody_information() (in module biocontext_kb.core.antibodyregistry) get_antibody_list() (in module biocontext_kb.core.antibodyregistry) get_available_ontologies() (in module biocontext_kb.core.ols) get_available_pharmacologic_classes() (in module biocontext_kb.core.openfda) get_biorxiv_preprint_details() (in module biocontext_kb.core.biorxiv) get_cell_ontology_terms() (in module biocontext_kb.core.ols) get_chebi_terms_by_chemical() (in module biocontext_kb.core.ols) get_drug_by_application_number() (in module biocontext_kb.core.openfda) get_drug_label_info() (in module biocontext_kb.core.openfda) get_drug_statistics() (in module biocontext_kb.core.openfda) get_efo_id_by_disease_name() (in module biocontext_kb.core.ols) get_ensembl_id_from_gene_symbol() (in module biocontext_kb.core.ensembl) get_europepmc_articles() (in module biocontext_kb.core.europepmc) get_europepmc_fulltext() (in module biocontext_kb.core.europepmc) get_generic_equivalents() (in module biocontext_kb.core.openfda) get_go_terms_by_gene() (in module biocontext_kb.core.ols) get_human_protein_atlas_info() (in module biocontext_kb.core.proteinatlas) get_interpro_entry() (in module biocontext_kb.core.interpro) get_kegg_id_by_gene_symbol() (in module biocontext_kb.core.kegg)

get_mcp_tools() (in module biocontext_kb.app) get_open_targets_graphql_schema() (in module biocontext_kb.core.opentargets) get_open_targets_query_examples() (in module biocontext_kb.core.opentargets) get_openapi_mcps() (in module biocontext_kb.openapi) get_panglaodb_marker_genes() (in module biocontext_kb.core.panglaodb) get_panglaodb_options() (in module biocontext_kb.core.panglaodb) get_pride_project() (in module biocontext_kb.core.pride) get_protein_domains() (in module biocontext_kb.core.interpro) get_reactome_info_by_identifier() (in module biocontext_kb.core.reactome) get_recent_biorxiv_preprints() (in module biocontext_kb.core.biorxiv) get_recruiting_studies_by_location() (in module biocontext_kb.core.clinicaltrials) get_string_id() (in module biocontext_kb.core.stringdb) get_string_interactions() (in module biocontext_kb.core.stringdb) get_string_network_image() (in module biocontext_kb.core.stringdb) get_string_similarity_scores() (in module biocontext_kb.core.stringdb) get_studies_by_condition() (in module biocontext_kb.core.clinicaltrials) get_studies_by_intervention() (in module biocontext_kb.core.clinicaltrials) get_study_details() (in module biocontext_kb.core.clinicaltrials) get_term_details() (in module biocontext_kb.core.ols) get_term_hierarchical_children() (in module biocontext_kb.core.ols) get_uniprot_id_by_protein_symbol() (in module biocontext_kb.core.uniprot) get_uniprot_protein_info() (in module biocontext_kb.core.uniprot)

L

logger (in module biocontext_kb.app)

M

mcp_app (in module biocontext_kb.app) module biocontext_kb biocontext_kb.app biocontext_kb.core biocontext_kb.core.alphafold biocontext_kb.core.antibodyregistry biocontext_kb.core.biorxiv biocontext_kb.core.clinicaltrials biocontext_kb.core.ensembl biocontext_kb.core.europepmc biocontext_kb.core.grants biocontext_kb.core.interpro biocontext_kb.core.kegg biocontext_kb.core.ols biocontext_kb.core.openfda biocontext_kb.core.opentargets biocontext_kb.core.panglaodb biocontext_kb.core.pride biocontext_kb.core.proteinatlas biocontext_kb.core.reactome biocontext_kb.core.scholarly biocontext_kb.core.stringdb biocontext_kb.core.uniprot biocontext_kb.logging biocontext_kb.main biocontext_kb.openapi biocontext_kb.utils

Q

query_kegg() (in module biocontext_kb.core.kegg)

query_open_targets_graphql() (in module biocontext_kb.core.opentargets)

R

run_app() (in module biocontext_kb) (in module biocontext_kb.main)

S

search_drugs_by_therapeutic_class() (in module biocontext_kb.core.openfda) search_drugs_fda() (in module biocontext_kb.core.openfda) search_google_scholar_publications() (in module biocontext_kb.core.scholarly) search_grants_gov() (in module biocontext_kb.core.grants) search_interpro_entries() (in module biocontext_kb.core.interpro)

search_ontology_terms() (in module biocontext_kb.core.ols) search_pride_projects() (in module biocontext_kb.core.pride) search_pride_proteins() (in module biocontext_kb.core.pride) search_studies() (in module biocontext_kb.core.clinicaltrials) setup() (in module biocontext_kb.app) slugify() (in module biocontext_kb.utils)